openfold.utils.loss =================== .. automodule:: openfold.utils.loss .. rubric:: Classes .. autosummary:: AlphaFoldLoss .. rubric:: Functions .. autosummary:: backbone_loss between_residue_bond_loss between_residue_clash_loss chain_center_of_mass_loss compute_fape compute_plddt compute_predicted_aligned_error compute_renamed_ground_truth compute_tm compute_violation_metrics compute_violation_metrics_np distogram_loss experimentally_resolved_loss extreme_ca_ca_distance_violations fape_loss find_structural_violations find_structural_violations_np lddt lddt_ca lddt_loss masked_msa_loss sidechain_loss sigmoid_cross_entropy softmax_cross_entropy supervised_chi_loss tm_loss torsion_angle_loss violation_loss within_residue_violations