openfold.data.toolsΒΆ

Modules

openfold.data.tools.hhblits

Library to run HHblits from Python.

openfold.data.tools.hhsearch

Library to run HHsearch from Python.

openfold.data.tools.hmmbuild

A Python wrapper for hmmbuild - construct HMM profiles from MSA.

openfold.data.tools.hmmsearch

A Python wrapper for hmmsearch - search profile against a sequence db.

openfold.data.tools.jackhmmer

Library to run Jackhmmer from Python.

openfold.data.tools.kalign

A Python wrapper for Kalign.

openfold.data.tools.parse_msa_files

openfold.data.tools.utils

Common utilities for data pipeline tools.