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OpenFold documentation
OpenFold documentation

Guides

  • Setting Up OpenFold
  • OpenFold Inference
  • Soloseq inference
  • Multimer Inference
  • Setting up the OpenFold PDB training set from RODA
  • Training OpenFold

Reference

  • Auxiliary Sequence Files for OpenFold Training
  • Notes on OpenFold Training and Parameters
  • FAQ
  • Original OpenFold README

Python API

  • Openfold Python API Reference
    • openfold
      • openfold.config
      • openfold.data
        • openfold.data.data_modules
        • openfold.data.data_pipeline
        • openfold.data.data_transforms
        • openfold.data.data_transforms_multimer
        • openfold.data.errors
        • openfold.data.feature_pipeline
        • openfold.data.feature_processing_multimer
        • openfold.data.input_pipeline
        • openfold.data.input_pipeline_multimer
        • openfold.data.mmcif_parsing
        • openfold.data.msa_identifiers
        • openfold.data.msa_pairing
        • openfold.data.parsers
        • openfold.data.templates
        • openfold.data.tools
          • openfold.data.tools.hhblits
          • openfold.data.tools.hhsearch
          • openfold.data.tools.hmmbuild
          • openfold.data.tools.hmmsearch
          • openfold.data.tools.jackhmmer
          • openfold.data.tools.kalign
          • openfold.data.tools.parse_msa_files
          • openfold.data.tools.utils
      • openfold.model
        • openfold.model.dropout
        • openfold.model.embedders
        • openfold.model.evoformer
        • openfold.model.heads
        • openfold.model.model
        • openfold.model.msa
        • openfold.model.outer_product_mean
        • openfold.model.pair_transition
        • openfold.model.primitives
        • openfold.model.structure_module
        • openfold.model.template
        • openfold.model.torchscript
        • openfold.model.triangular_attention
        • openfold.model.triangular_multiplicative_update
      • openfold.np
        • openfold.np.protein
        • openfold.np.relax
          • openfold.np.relax.amber_minimize
          • openfold.np.relax.cleanup
          • openfold.np.relax.relax
          • openfold.np.relax.utils
        • openfold.np.residue_constants
      • openfold.resources
      • openfold.utils
        • openfold.utils.all_atom_multimer
        • openfold.utils.argparse_utils
        • openfold.utils.callbacks
        • openfold.utils.checkpointing
        • openfold.utils.chunk_utils
        • openfold.utils.exponential_moving_average
        • openfold.utils.feats
        • openfold.utils.geometry
          • openfold.utils.geometry.quat_rigid
          • openfold.utils.geometry.rigid_matrix_vector
          • openfold.utils.geometry.rotation_matrix
          • openfold.utils.geometry.test_utils
          • openfold.utils.geometry.utils
          • openfold.utils.geometry.vector
        • openfold.utils.import_weights
        • openfold.utils.kernel
          • openfold.utils.kernel.attention_core
        • openfold.utils.logger
        • openfold.utils.loss
        • openfold.utils.lr_schedulers
        • openfold.utils.multi_chain_permutation
        • openfold.utils.precision_utils
        • openfold.utils.rigid_utils
        • openfold.utils.superimposition
        • openfold.utils.tensor_utils
        • openfold.utils.trace_utils
        • openfold.utils.validation_metrics
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openfold.npΒΆ

Modules

openfold.np.protein

Protein data type.

openfold.np.relax

openfold.np.residue_constants

Constants used in AlphaFold.
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Last updated on 2026-01-23 07:51